Comparative X-ray Microscopic Examination of a Fossilized Shell

How Much Faster is the X4 Poseidon Micro-CT vs the SkyScan 1272?

Figure 1: Photograph of the fossilized shell imaged on both the SkyScan 1272 CMOS Edition and the Bruker X4 Poseidon desktop micro-CT instrumentsImage quality, resolution, and the types of samples that can be studied are all factors that researchers must consider when selecting the optimal micro-CT instrument for specific applications. Key components of the systems include the X-ray sources, detectors, and sample stages, which work along with reconstruction software to support a wide range of research. In expanding on our available documentation related to the new Bruker X4 Poseidon Modular Micro-CT system, we compared the X4 Poseidon against the SkyScan 1272 CMOS Edition for imaging a small, yet surprisingly dense, fossilized shell sample.

The SkyScan 1272 is equipped with a 5µm spot size reflection X-ray source with up to 10W of total X-ray flux. The modular X4 Poseidon can be equipped with either a similar 5µm reflection X-ray source with an expanded power rating of up to 20W, or the new 2µm spot size transmission X-ray source, which is capable of up to 16W of X-ray power. For either configuration of the X4 Poseidon, the maximum X-ray power will increase 60-100% above that of the SkyScan 1272. While X-ray energy does attenuate exponentially, the increased power provided by the X4 Poseidon will unlock additional sample types or reduce artifacts arising from limited transmission through samples that may have been a challenge for the SkyScan 1272.

So How Much Faster is the X4 Poseidon Micro-CT than the SkyScan 1272?

The SkyScan 1272 is equipped with a 16MP sCMOS detector to capture high resolution images of samples, while the modular X4 Poseidon expands the detector options by having both an available 16MP sCMOS along with the ability to utilize a 7MP high-speed flat panel depending on the build configuration selected.

For this fossilized shell sample, the new X4 Poseidon produced comparable images at the same effective resolution with a 90% reduction in imaging time by making use of the new 7MP high-speed flat panel.

X-Ray Microscopic Imaging of Fossils

We directly compared a dataset from SkyScan 1272 at an isotropic voxel size of 8µm against a dataset from the modular X4 Poseidon desktop micro-CT instrument equipped with the 16W transmission source and the 7MP flat panel detector. Since the desired imaging voxel size for the fossil, 8µm, doesn’t require ultra-high resolution, the SkyScan 1272 utilized 2×2 binning on the detector to reduce the imaging time and the X4 Poseidon utilized the high-speed flat panel detector.

To capture the fossil dataset for both instruments, we operated at the top end of the X-ray power and energy for both systems. This meant an energy of 100kV at 10W for the SkyScan 1272 and an energy of 110kV at ~16W for the X4 Poseidon.

Figure 2: Planar 2D slices through the fossilized shell imaged using the SkyScan 1272 (top) and X4 Poseidon (bottom)

As shown from DataViewer in Figure 2, both the SkyScan 1272 and the X4 Poseidon produced high-quality datasets from imaging the fossilized shell. There appear to be three distinct phases within the samples, based on contrast in the reconstructed datasets. There are two phases with moderate density near one another, as shown by the dark and medium-gray pixels, and then a third phase of higher density (likely inorganic or metallic in nature) that comprises the small white spheres in the reconstructed images.

 

Figure 3: Clipped volumetric views through the fossilized shell imaged with the SkyScan 1272 (top) and X4 Poseidon (bottom) desktop micro-CT instruments

When looking at volumetric renderings from both samples, Figure 3 highlights the detailed view we obtained with both instruments when examining the internal structures and features for the fossilized shell. Both datasets have similar levels of detail, with the SkyScan 1272 dataset requiring about 90 minutes for imaging and the X4 Poseidon dataset being acquired in only 9 minutes.

Figure 4: Maverick 3D rendering of a clipped view through the fossilized shell

From our reconstructed X4 Poseidon dataset, we imported the voxel-based dataset into Simpleware ScanIP software with the CAD add-on module. This allowed us to segment into volumetric models based on global threshold values to isolate the two medium density phases as well as the high-density spheres. Maverick Render Indie then allowed us to apply colors and textures to the models, as shown in Figure 4.

Conclusion

A consistent standard in high-resolution desktop micro-CT imaging, the SkyScan 1272 remains an excellent instrument for high-resolution imaging of organic samples and even some inorganic samples such as this fossilized shell. Building on the success of the SkyScan 1272, we are excited to see the progress achieved by the modular X4 Poseidon as the heir apparent to the SkyScan 1272 and SkyScan 1275 product lines. With the modular design of the X4 Poseidon, each system will be custom-built, tailored to the needs of your individual laboratory, optimizing your investment in technologies that are useful to your work instead of a one-size-fits-all approach. This provides resolution from the new X4 Poseidon on par with the SkyScan 1272 at imaging times on par with the SkyScan 1275.

We hope you find this Image of the Month informative and encourage you to subscribe to our newsletter and social media channels in preparation for the continuation of our Image of the Month series next month.

Scan Specifications

 

Sample Shell Fossil (1272) Shell Fossil (X4)
Voltage (kV) 100 110
Current (µA) 100 141
Filter 0.11 mm copper 0.1 mm copper
Voxel Size (µm) 8 8
Rotation Step 0.2 0.2
Exposure Time (ms) 1301 80
Rotation Extent (deg.) 180 180
Scan Time (HH:MM:SS) 01:29:56 00:09:46

 

 

These scans were completed on our SkyScan 1272 micro-CT system at the Micro Photonics Imaging Laboratory in Allentown, PA along with a prototype X4 Poseidon micro-CT system at the Bruker AXS Headquarters in Madison, WI. Reconstructions were completed using NRecon 2.0 while visualization and volumetric inspection of the 2D and 3D results were completed using DataViewer and CTVox. The fossilized shell was converted to a STL volumetric model using Synopsys’ Simpleware ScanIP software with the CAD add-on module (Synopsys, Inc., Mountain View, USA) before 3D rendering using Maverick Render Indie (Random Control, Madrid, Spain).

 

Would you like your work to be featured in our monthly newsletter? If so, please contact us by calling Seth Hogg at 610-366-7103 or emailing seth.hogg@microphotonics.com.

References

*Simpleware software (Synopsys, Inc., Mountain View, USA) enables you to comprehensively process 3D image data (MRI, CT, micro-CT, FIB-SEM…) and export models suitable for CAD, CAE and 3D printing. Use Simpleware software’s capabilities to visualize, analyze, and quantify your data, and to export models for design and simulation workflows. Simpleware™ is a trademark of Synopsys, Inc. in the U.S. and/or other countries.

Related Products

Related Articles

X4 POSEIDON — FAQs

The X4 POSEIDON modular micro-CT system is a major advancement in micro-CT technology that delivers

US Partner Form









    Coming Soon:

    Customer access to tips and instructional videos, method notes, tutorials, application notes, and other content to support your research.

    Employment

    Our people are the key to our success.

    We seek and employ talented scientists who have the curiosity and knowledge to offer intelligent collaboration with the researchers who are our customers. We don’t have any openings but would be happy to receive resumes to hold on file.

     

    Please submit resumes to: info@microphotonics.com

    Micro Photonics Inc.
    1550 Pond Road, STE 110
    Allentown, PA 18104

    Events

    CONFERENCES

    WVC Annual Conference
    Las Vegas, NV
    February 19-21
    Booth 1484

    ORS
    February 8-10, 2025
    Phoenix, AZ
    Website

    MD ANDERSON PRECLINICAL IMAGING CONFERENCE
    April 9-11, 2025
    MD Anderson
    Houston, TX

    AALAS
    November 9-13, 2025
    Long Beach, CA
    Website

     

    Privacy Policy

    What information do we collect? We collect information from you when you register on our site, place an order, subscribe to our newsletter or fill out a form. When ordering or registering on our site, as appropriate, you may be asked to enter your: name, e-mail address, mailing address, phone number or credit card information. You may, however, visit our site anonymously.
    What do we use your information for? Any of the information we collect from you may be used in one of the following ways:

    ; To personalize your experience (your information helps us to better respond to your individual needs).

    ; To improve customer service (your information helps us to more effectively respond to your customer service requests and support needs).

    ; To process transactions. Your information, whether public or private, will not be sold, exchanged, transferred, or given to any other company for any reason whatsoever, without your consent, other than for the express purpose of delivering the purchased product or service requested.

    ; To send periodic emails .The email address you provide for order processing, will only be used to send you information and updates pertaining to your order.Note: If at any time you would like to unsubscribe from receiving future emails, we include detailed unsubscribe instructions at the bottom of each email.

    Terms and Conditions

    Terms of Service for www.microphotonics.com

    Introduction. Welcome to www.microphotonics.com. This website is owned and operated by Micro Photonics Inc. By visiting our website and accessing the information, resources, services, products, and tools we provide, you understand and agree to accept and adhere to the following terms and conditions as stated in this policy (hereafter referred to as ‘User Agreement’), along with the terms and conditions as stated in our Privacy Policy (please refer to the Privacy Policy section below for more information).

    This agreement is in effect as of October 25, 2018.

    We reserve the right to change this User Agreement from time to time without notice. You acknowledge and agree that it is your responsibility to review this User Agreement periodically to familiarize yourself with any modifications. Your continued use of this site after such modifications will constitute acknowledgment and agreement of the modified terms and conditions.

    Responsible Use and Conduct. By visiting our website and accessing the information, resources, services, products, and tools we provide for you, either directly or indirectly (hereafter referred to as ‘Resources’), you agree to use these Resources only for the purposes intended as permitted by (a) the terms of this User Agreement, (b) the terms of any applicable confidentiality, non-disclosure, or other agreement between you and a third party, and (c) applicable laws, regulations and generally accepted online practices or guidelines.

    Call Now Button